One Month International Bioinformatics Workshop on : Genomes, Networks & Pathways (5th Ed.)

DECODE LIFE WORKSHOP

Workshop Highlights

Upskilling

Workshop will help in learning core Bioinformatics skills for cutting edge research.

Workshop Material

Workshop material along with video recording of each session.

Networking

Instructor and participants will be from different corners of the world where participants will be encouraged for collaborations.

Global Instructors

Instructors from diverse global institutions.

GLOBAL EXPERTS MEET UP

Course Trainers

CEO at Growdea Technologies Pvt Ltd.Indo-Australian Gold fellow at Griffith University, Australia.
Postdoctoral Research Fellow, Albert Einstein College of Medicine, New York
Postdoctoral Fellow, NCBS, Bengaluru, India Ph.D: NCBS, Bengaluru, India
Post Doctoral Associate at University of Illinois, Chicago, USA. (Ph.D.) | Bioinformatics | Cancer Genetics | Artificial Intelligence | Structure Biology | Pharmaceuticals

Ashish Kumar Chaudhary

Scientist, Strand life sciences IIT Bombay Alumni
Research Associate The University of Sheffield (UK)

OUR EXPERIENCE

Who we are

 Decode life is a group of enthusiastic researchers, who are aimed to (de)code the life sciences. Our goal is to create a self sustained system through cross learning and joining hands together to address the problems that matter the most. With the availability of large data, Bioinformatics has become an integral part for almost every biomedical lab. We wanted to fill in the niche and train the next generation of data scientists..

ONE MONTH COMPREHENSIVE BIOINFORMATICS TRAINING

Schedule of the workshop

UPSKILL YOUR PORTFOLIO WITH GLOBAL EXPERTS

From

28 Sep, 2024

To

21 Oct, 2024

7:00 - 8:00 PM IST
28 Sep - 21 Oct, 2024
Schedule of Workshop
DateDayTopic
Sep-28SaturdayIntroduction to linux command line
Sep-29SundayAdvance Linux Commands
Sep-30MondayR Programming
Oct-01TuesdayR Programming
Oct-02WednesdayR Programming
Oct-03ThursdayGithub
Oct-04FridayRNASeq
Oct-05SaturdayRNASeq
Oct-06SundayOFF
Oct-07MondayDatabases : String, Biogrid, Intact, HPRD, Mint, Dip database
Oct-08TuesdayComputational techniques like structure based approaches, gene expression, domain pairs, gene fusion, orthology based approaches for predicting Protein-protein interaction in silico
Oct-09WednesdayGraph theory, protein-protein interaction (PPI) networks and databases,download PPI data from HIPPIE database.
Oct-10ThursdayCentrality calculation & ranking of network genes using –igraph R package,NetworkX Python package, -GUI softwares
Oct-11FridayPractical demonstration of Cytoscape with useful plug-ins
Oct-12Saturday

DNA-methylation

Whole Genome Bisulfite Sequencing (WGS)

Quality control of WGBS data

Oct-13Sunday

Mapping of WGBS data to reference genome

Methylation call

Visualisation of the genome-wide methylation profile

Plotting the methylation profile across different genomic regions

Oct-14MondayATAC Seq:
Introduction to ATAC-Seq
Difference between bulk and single cell ATAC-Seq
ATAC-Seq Workflow
Oct-15TuesdayATAC Seq:
packages/tools to process scATAC-Seq
Reading and exploring the data
Preprocessing and quality control for scATAC-Seq
Nucleosome Signal and Nucleosome banding pattern
Transcription Start Site (TSS) enrichment score
Clustering, differential accessibility analysis, RNA activity estimation
Oct-16WednesdayATAC Seq:
strategies to annotate scATAC-Seq cells
Integrating scATAC-Seq with scRNA-Seq
Visualization
Oct-17ThursdayCHIPseq – 1. Obtaining FASTQ files of the samples using SRA accession IDs
2. Perform quality check of the sample sequences using FASTQC
3. Trimming and removal of adaptor sequences using Trimmomatic
Oct-18FridayCHIPseq -4. Aligning to reference genome (human hg38) using Bowtie2
5. Peak calling using MACS2
Oct-19Saturday

MNase-Seq Introduction and Preliminary Data Processing (Day 1)

Nucleosome Occupancy

MNase-Seq

Quality control of Mnase-Seq data

Oct-20Sunday

Mapping of MNase-Seq data to reference genome using Bowtie

Nucleosome positioning identification using iNPS

Differential nucleosome positioning using DANPOS

Visualisation and plotting of genome-wide Nucleosome Occupancy

Oct-21MondayReactome -Database of Biological Pathways
Indian Participants

₹ 1200

International Participants

$ 25

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Discounted Price

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