ONE MONTH COMPREHENSIVE BIOINFORMATICS TRAINING
Schedule of the workshop
UPSKILL YOUR PORTFOLIO WITH GLOBAL EXPERTS
One Month International Comprehensive Bioinformatics Workshop on - Transcriptomics with NGS September - 2025
Upskilling
Workshop will help in learning core Bioinformatics skills for cutting edge research.
Workshop Material
Workshop material along with video recording of each session.
Networking
Instructor and participants will be from different corners of the world where participants will be encouraged for collaborations.
Global Instructors
Instructors from diverse global institutions.
GLOBAL EXPERTS MEET UP
Course Trainers
CEO at Growdea Technologies Pvt Ltd.Indo-Australian Gold fellow at Griffith University, Australia.
OUR EXPERIENCE
Who we are
Decode life is a group of enthusiastic researchers, who are aimed to (de)code the life sciences. Our goal is to create a self sustained system through cross learning and joining hands together to address the problems that matter the most. With the availability of large data, Bioinformatics has become an integral part for almost every biomedical lab. We wanted to fill in the niche and train the next generation of data scientists..
7:00 - 8:00 PM IST
06 September - 29 September, 2025
Schedule of Workshop
| Date | Day | Topic |
| 06-Sep-25 | Saturday | Introduction to Command Line |
| 07-Sep-25 | Sunday | Advanced Linux/Unix Commands |
| 08-Sep-25 | Monday | Core Skill: R programming |
| 09-Sep-25 | Tuesday | Core Skill: R programming |
| 10-Sep-25 | Wednesday | Core Skill: R programming |
| 11-Sep-25 | Thursday | Raw data QC Trimming strategies References & indices Alignment Counting & import , Normalization |
| 12-Sep-25 | Friday | Differential Expression (DE), Volcano plots; heatmaps; storytelling |
| 13-Sep-25 | Saturday | Small RNA/miRNA-seq |
| 14-Sep-25 | Sunday | Small RNA/miRNA-seq miRDeep2; QC of length profiles; differential miRNA lncRNA & circRNA Annotation issues; CIRI2; lncRNA functional hypotheses |
| 15-Sep-25 | Monday | RNA fusions & variants detection using NGS datasets |
| 16-Sep-25 | Tuesday | Isoforms & splicing |
| 17-Sep-25 | Wednesday | Batch effects & confounders |
| 18-Sep-25 | Thursday | Fundamentals of Single-Cell Genomics Overview of single-cell analysis and its importance. Comparison with bulk sequencing. Key technologies and workflows (scRNA-seq, scATAC-seq). |
| 19-Sep-25 | Friday | Quality Control and Preprocessing Filtering low-quality cells and genes. Normalization techniques (log-normalization, SCTransform). Batch effect correction (Seurat, CCA, Harmony). |
| 20-Sep-25 | Saturday | OFF |
| 21-Sep-25 | Sunday | OFF |
| 22-Sep-25 | Monday | Dimensionality Reduction and Clustering PCA, t-SNE, UMAP for data visualization. Clustering and Cell Type Identification Clustering methods (Louvain, Leiden, K-means, HDBSCAN, SC3). |
| 23-Sep-25 | Tuesday | Cell Type Annotation Marker gene identification. Reference-based and de novo annotation methods. |
| 24-Sep-25 | Wednesday | Differential Expression and Pathway Analysis Differential Gene Expression (DGE) Analysis Identifying cluster-specific and condition-specific genes. Pseudobulk analysis. |
| 25-Sep-25 | Thursday | Single-Cell RNA Velocity and Time-Series Analysis Predicting future cell states using scVelo. Mapping developmental transitions. Advanced time-series modeling for single-cell data. |
| 26-Sep-25 | Friday | Trajectory and Pseudotime Analysis Reconstructing cell differentiation pathways (Monocle). Identifying branching and decision points |
| 27-Sep-25 | Saturday | Cell-Cell Communication Analysis Intercellular crosstalk analysis. Practical session using CellChat in R. |
| 28-Sep-25 | Sunday | scATAC+scRNA integration; |
| 29-Sep-25 | Monday | Spatial transcriptomics Visium/Slide-seq; spatial QC; clustering |
Details
Details
Mode of Delivery
Online case-based teaching methodology will be used for all the modules.
Key Features
Each session will be of 75 TO 90 Mins and Video recording of the complete workshop will be provided.
E-certificate will be provided.
Whatsapp contact +91 9996338972 or E-mail- decodelife.co.in@gmail.com
