ONE MONTH COMPREHENSIVE BIOINFORMATICS TRAINING
Schedule of the workshop
UPSKILL YOUR PORTFOLIO WITH GLOBAL EXPERTS
10 days International Bioinformatics Workshop on - Molecular Dynamics Simulation Analysis(Advance)
Upskilling
Workshop will help in learning core Bioinformatics skills for cutting edge research.
Workshop Material
Workshop material along with video recording of each session.
Networking
Instructor and participants will be from different corners of the world where participants will be encouraged for collaborations.
Global Instructors
Instructors from diverse global institutions.
GLOBAL EXPERTS MEET UP
Course Trainers
CEO at Growdea Technologies Pvt Ltd.Indo-Australian Gold fellow at Griffith University, Australia.
OUR EXPERIENCE
Who we are
Decode life is a group of enthusiastic researchers, who are aimed to (de)code the life sciences. Our goal is to create a self sustained system through cross learning and joining hands together to address the problems that matter the most. With the availability of large data, Bioinformatics has become an integral part for almost every biomedical lab. We wanted to fill in the niche and train the next generation of data scientists..
6:00 - 7:00 PM IST
29 Feb - 10 March, 2024
Schedule of Workshop
| Date | Instructor | Topics |
| 29 Feb,2024 | Avinash | Introduction to MD Simulation Analysis Overview of Molecular Dynamics (MD) Simulations Importance of Post MD Simulation Analysis Common software tools and packages for analysis |
| 1 Mar,2024 | Avinash | Data Preparation and Cleaning Data file formats (e.g., XTC) Data preprocessing and cleaning Handling missing or corrupted data |
| 2 Mar,2024 | OFF | |
| 3 Mar,2024 | Avinash | Trajectory Analysis Extracting information from MD trajectories Calculating structural parameters (RMSD, RMSF) H-Bond Calculation Center of Mass Distance |
| 4 Mar,2024 | Avinash | Free Energy Calculations Overview of free energy methods (e.g., MM/PBSA, MM/GBSA) Performing binding free energy calculations, Principal Component Analysis (PCA) Understanding PCA and its applications in MD analysis Plotting PCA |
| 5 Mar,2024 | OFF | |
| 6 Mar,2024 | Suyash | Free Energy Landscape (FEL) Understanding FEL and its applications in MD analysis Plotting FEL |
| 7 Mar,2024 | Suyash | Introduction to Umbrella Sampling Theoretical Basis of Umbrella Sampling Collective Variables (CVs) and Bias Potentials Advantages and Limitations |
| 8 Mar,2024 | OFF | |
| 9 Mar,2024 | Suyash | Preparing for Umbrella Sampling Defining the Reaction Coordinate Selection of CVs Generating Initial Structures Choosing Umbrella Potentials |
| 10 Mar,2024 | Suyash | Running Umbrella Sampling Simulations, Analyzing Umbrella Sampling Data Free Energy Profiles and Histograms Wham (Weighted Histogram Analysis Method) PMF (Potential of Mean Force) Calculation |
Details
Details
Mode of Delivery
Online case-based teaching methodology will be used for all the modules.
Key Features
Each session will be of 75 TO 90 Mins and Video recording of the complete workshop will be provided.
E-certificate will be provided.
Whatsapp contact +91 9996338972 or E-mail- decodelife.co.in@gmail.com
