ONE MONTH COMPREHENSIVE BIOINFORMATICS TRAINING
Schedule of the workshop
UPSKILL YOUR PORTFOLIO WITH GLOBAL EXPERTS
One Month International Bioinformatics Workshop on : Genomes, Networks & Pathways (5th Ed.)
Upskilling
Workshop will help in learning core Bioinformatics skills for cutting edge research.
Workshop Material
Workshop material along with video recording of each session.
Networking
Instructor and participants will be from different corners of the world where participants will be encouraged for collaborations.
Global Instructors
Instructors from diverse global institutions.
GLOBAL EXPERTS MEET UP
Course Trainers
CEO at Growdea Technologies Pvt Ltd.Indo-Australian Gold fellow at Griffith University, Australia.
Post Doctoral Associate at University of Illinois, Chicago, USA. (Ph.D.) | Bioinformatics | Cancer Genetics | Artificial Intelligence | Structure Biology | Pharmaceuticals
Ashish Kumar Chaudhary
Scientist, Strand life sciences IIT Bombay Alumni
OUR EXPERIENCE
Who we are
Decode life is a group of enthusiastic researchers, who are aimed to (de)code the life sciences. Our goal is to create a self sustained system through cross learning and joining hands together to address the problems that matter the most. With the availability of large data, Bioinformatics has become an integral part for almost every biomedical lab. We wanted to fill in the niche and train the next generation of data scientists..
7:00 - 8:00 PM IST
28 Sep - 21 Oct, 2024
Schedule of Workshop
| Date | Day | Topic |
| Sep-28 | Saturday | Introduction to linux command line |
| Sep-29 | Sunday | Advance Linux Commands |
| Sep-30 | Monday | R Programming |
| Oct-01 | Tuesday | R Programming |
| Oct-02 | Wednesday | R Programming |
| Oct-03 | Thursday | Github |
| Oct-04 | Friday | RNASeq |
| Oct-05 | Saturday | RNASeq |
| Oct-06 | Sunday | OFF |
| Oct-07 | Monday | Databases : String, Biogrid, Intact, HPRD, Mint, Dip database |
| Oct-08 | Tuesday | Computational techniques like structure based approaches, gene expression, domain pairs, gene fusion, orthology based approaches for predicting Protein-protein interaction in silico |
| Oct-09 | Wednesday | Graph theory, protein-protein interaction (PPI) networks and databases,download PPI data from HIPPIE database. |
| Oct-10 | Thursday | Centrality calculation & ranking of network genes using –igraph R package,NetworkX Python package, -GUI softwares |
| Oct-11 | Friday | Practical demonstration of Cytoscape with useful plug-ins |
| Oct-12 | Saturday | DNA-methylation Whole Genome Bisulfite Sequencing (WGS) Quality control of WGBS data |
| Oct-13 | Sunday | Mapping of WGBS data to reference genome Methylation call Visualisation of the genome-wide methylation profile Plotting the methylation profile across different genomic regions |
| Oct-14 | Monday | ATAC Seq: Introduction to ATAC-Seq Difference between bulk and single cell ATAC-Seq ATAC-Seq Workflow |
| Oct-15 | Tuesday | ATAC Seq: packages/tools to process scATAC-Seq Reading and exploring the data Preprocessing and quality control for scATAC-Seq Nucleosome Signal and Nucleosome banding pattern Transcription Start Site (TSS) enrichment score Clustering, differential accessibility analysis, RNA activity estimation |
| Oct-16 | Wednesday | ATAC Seq: strategies to annotate scATAC-Seq cells Integrating scATAC-Seq with scRNA-Seq Visualization |
| Oct-17 | Thursday | CHIPseq – 1. Obtaining FASTQ files of the samples using SRA accession IDs 2. Perform quality check of the sample sequences using FASTQC 3. Trimming and removal of adaptor sequences using Trimmomatic |
| Oct-18 | Friday | CHIPseq -4. Aligning to reference genome (human hg38) using Bowtie2 5. Peak calling using MACS2 |
| Oct-19 | Saturday | MNase-Seq Introduction and Preliminary Data Processing (Day 1) Nucleosome Occupancy MNase-Seq Quality control of Mnase-Seq data |
| Oct-20 | Sunday | Mapping of MNase-Seq data to reference genome using Bowtie Nucleosome positioning identification using iNPS Differential nucleosome positioning using DANPOS Visualisation and plotting of genome-wide Nucleosome Occupancy |
| Oct-21 | Monday | Reactome -Database of Biological Pathways |
Details
Details
Mode of Delivery
Online case-based teaching methodology will be used for all the modules.
Key Features
Each session will be of 75 TO 90 Mins and Video recording of the complete workshop will be provided.
E-certificate will be provided.
Whatsapp contact +91 9996338972 or E-mail- decodelife.co.in@gmail.com
