ONE MONTH COMPREHENSIVE BIOINFORMATICS TRAINING
Schedule of the workshop
UPSKILL YOUR PORTFOLIO WITH GLOBAL EXPERTS
International Advanced Bioinformatics Workshop on : Coarse-Grained and Steered MD Simulation
DECODE LIFE WORKSHOP
Workshop Highlights
Upskilling
Workshop will help in learning core Bioinformatics skills for cutting edge research.
Workshop Material
Workshop material along with video recording of each session.
Networking
Instructor and participants will be from different corners of the world where participants will be encouraged for collaborations.
Global Instructors
Instructors from diverse global institutions.
GLOBAL EXPERTS MEET UP
Course Trainers
CEO at Growdea Technologies Pvt Ltd.Indo-Australian Gold fellow at Griffith University, Australia.
OUR EXPERIENCE
Who we are
Decode life is a group of enthusiastic researchers, who are aimed to (de)code the life sciences. Our goal is to create a self sustained system through cross learning and joining hands together to address the problems that matter the most. With the availability of large data, Bioinformatics has become an integral part for almost every biomedical lab. We wanted to fill in the niche and train the next generation of data scientists..
8:30 - 9:30 PM IST
27 Jan, 2025 to 05 Feb
Schedule of Workshop
| Date | Time | Topic |
| 27 Jan, 2025 | Monday | Session 1: Introduction to Coarse-Grained MD Topics: Basics of coarse-graining: Key concepts and benefits Overview of popular force fields Applications of coarse-grained MD in biomolecular simulations |
| 28 Jan, 2025 | Tuesday | Session 2: System Preparation for Coarse-Grained MD Topics: Steps to map an all-atom system to a coarse-grained representation Preparing input files using MARTINI tools |
| 29 Jan, 2025 | Wednesday | Session 3: Running Coarse-Grained MD Simulations Topics: Workflow: Energy minimization, equilibration, and production runs Key considerations for coarse-grained simulations |
| 30 Jan, 2025 | Thursday | Session 4: Analysis of Coarse-Grained Simulations Topics: Extracting key metrics: Area per lipid, bilayer thickness, self-assembly Tools and methods for coarse-grained simulation analysis Analyzing lipid bilayer dynamics and visualizing results. Equip participants with the skills to analyze coarse-grained MD data |
| 31 Jan, 2025 | Friday | Session 5: Advanced Coarse-Grained Applications Topics: Modeling protein-lipid and protein-protein interactions Applications in large biomolecular complexes and self-assembly studies. Preparing and running a protein-membrane interaction simulation. |
| 1 Feb, 2025 | Saturday | Session 6: Introduction to Steered MD Topics: Principles of Steered MD: Applying external forces in simulations |
| 2 Feb, 2025 | Sunday | Session 7: Setting Up Steered MD Simulations Topics: Configuring Steered MD simulations: Reaction coordinates and force constants Defining pulling paths and setting up input files |
| 3 Feb, 2025 | Monday | Session 8: Analysis of Steered MD Simulations. Topics: Analyzing force-distance profiles and calculating work done Linking Steered MD results to physical properties. |
| 4 Feb, 2025 | Tuesday | Session 9: Advanced Techniques in Steered MD Topics: Multi-directional pulling and dynamic force spectroscopy Optimizing pulling velocities and force constants |
| 5 Feb, 2025 | Wednesday | Session 10: Troubleshooting and Open Discussion Topics: Addressing common challenges in coarse-grained and Steered MD simulations Optimizing workflows and overcoming technical barriers |
Details
Details
Mode of Delivery
Online case-based teaching methodology will be used for all the modules.
Key Features
Each session will be of 75 TO 90 Mins and Video recording of the complete workshop will be provided.
E-certificate will be provided.
Whatsapp contact +91 9996338972 or E-mail- decodelife.co.in@gmail.com
